#

Accession / Organism

Gene/Protein (Gene symbol) [notes for sides of linker (L or R)]

Linker and its Amino Acids in Genbank

Corresponding References According to Genbank; closest related match

1

Homo sapiens

Hs-cul-4A

aattcggcacgagctcgtgccgct

NSARARAA

Cell 85, 829-839. 1996.

2

Homo sapiens

Protein immuno-reactive with anti-PTH polyclonal antibodies

gcacgagctcgtgccgat

ARARAD

Proc. Assoc. Am. Physicians 107, 296-305. 1995.

3

BC041619

Homo sapiens

Protein KIAA0404, for IMAGE:5923662 [R: hypoth. prot. MGC16044]

ccctcgtgccgaattcggcacgag

PSCRIRHE

Proc. Natl. Acad. Sci. U.S.A. 99, 16899-16903. 2002.

4

AF176705 Homo sapiens

F-box protein FBX10 (PINX1) [R: vector]

cctcgtgccgaattc

PRAEF

Curr. Biol. 9, 1180-2. 1999.

5

X85792

Homo sapiens

Vpr binding protein 1

SCRIRHE

Benichou et al. [Unpublished]; J Biol Chem. 277, 45091-8. 2002

6

AF151109

Homo sapiens

Putative BRCA1-interacting protein (BRIP1)

ggcacgagctcgtgccgc

GTSSCR

Wang et al. BRCA1-interacting protein. [Unpublished]; Oncogene 19, 6152-8. 2000.

7

AF146697

Homo sapiens

FOXP1

aagaattcggcacgagct

KNSARA

Cancer Res. 61, 8820-8829. 2001.

8

NM_002342

Homo sapiens

Gene and 3' UTR for TNFR superfamily, member 3 (LTBR)

gctcgtgccgaattc

Genomics 16, 214-218. 1993. [Curated by NCBI]

9

X93499

Homo sapiens

RAB7 protein, GTP-binding [L: Dystroglycan 1. C: Rab7. R: Envelope glycoprotein]

ccccgaattcgggg & gcccgaattcgggc

Biochem. Biophys. Res. Commun. 229, 887-890. 1996.

10

X82200

Homo sapiens

Gene and mRNA for interferon-induced Staf50

gaattcggcacgagctc

J. Biol. Chem. 270, 14891-14898. 1995.

11

U31384

Homo sapiens

mRNA for G protein gamma-11 subunit

ggcacgagctcgtgccg

J. Biol. Chem. 270, 21765-21771. 1995.

12

AF379619

Homo sapiens

Intron near AB13, precursor mRNA

gaattcggcacgagct

van Roy and Staes. New human gene family. [Unpublished].

13

AY245868

Homo sapiens

CDS for Aldehyde oxidase-like protein (AOX2) pseudogene

aagaattcggcacgagca

LNSARA

Wright RM. Human aldehyde oxidase. [Unpublished].

14

AF339764

Homo sapiens

mRNA from Fetal liver spleen IMAGE:108721

gaattcggcacgagcggcacgagct

Genomics 79, 635-656. 2002.

15

U43527

Homo sapiens

5'UTR for Malignant melanoma metastasis-suppressor (KiSS-1)

(ctct)¹⁵cctcgtgccgaattcggcacgag

J. Natl. Cancer Inst. 88, 1731-1737. 1996; Genomics 54, 145-148. 1998.

16

AY029161

Homo sapiens

3'UTR for PinX1 [L: LPTL. R: PHPT1]

ctcgtgccgaattcggcac

Cell 107, 347-359. 2001.

17

NR_001557

Homo sapiens

Gene Aldehyde oxidase 2 (AOX2) on Chromosome 2

gaattcggcacgagc

J. Biol. Chem. 276, 46347-46363. 2001; Genome Res. 6, 807-828. 1996.

18

AF039656

Homo sapiens

Gene for neuronal tissue-enriched acidic protein (NAP-22)

gaattcggcacgagctc

Mol. Cells 8, 471-477. 1998.

19

Z28355

Homo sapiens

cDNA, Atrium library Human heart

(ctct)¹⁶cgtgccgaattcggc

C. R. Acad. Sci. III, Sci. Vie. 318, 263-272. 1995.

20

AB030505 Mus musculus

and 5'UTR for Retinol dehydrogenase 11 (Rdh11)

ctcgtgccgaattcggcacgag

Goto and Eddy. [Direct Submission]; Diabetes 52, 2666-74. 2003.

21

NM_178759 and BC032879 Mus musculus

T-cell immunoglobulin and mucin domain containing 4 (Timd4) [L: Doc4. R: Hypot. Threo-rich region/Ig ctg prot]

acctcgtgccgaattcggcacgag

TSCRIRHE

Eur. J. Immunol. 34, 494-03. 2004; Proc. Natl. Acad. Sci. U.S.A. 99, 16899-03. 2002.

22

AJ237586 Mus musculus

Hypothetical protein in thymocytes

cactcgtgccgaattcggcacgag

HSCRIRHE

Immunogenetics. 50, 255-70. 1999.

23

NM_026928

Mus musculus

1810014F10Rik, fucose binding

TSCRIRHEASCRIRHE

J. Biol. Chem. 278, 28173-28180. 2003; Biotechnol. Bioeng. 86, 136-148. 2004.

24

AB094480

Mus musculus

LE51 hypothetical protein

TSCRIRHEASCRIRHE

Biotechnol. Bioeng. 86, 136-148. 2004.

25

AF487346

Mus musculus

Dscaml1 [L: Nucleoside diphosphate kinase homologue]

TRAEFGTR

Shimohata et al. Cloning and characterization of mouse Dscaml1 [Unpublished].

26

U24160

Mus musculus

5'UTR for Dvl-2

gaattcggcacgagctcg

Mech. Dev. 58, 15-26. 1996.

27

L49502

Mus musculus

Gene, mRNA and 5'UTR for Phosphoprotein (p150TSP)

cgaattcggcacgagct

J. Biol. Chem. 271, 6952-6962. 1996.

28

AJ010792

Mus musculus

Muc5AC protein

gaattcggcacgagctgc

EFGTSC

Gastroenterology 118, 70-80. 2000.

29

Mus musculus

5'UTR for bromodomain containing 7 (also called Brd7, Bp75, Celtix1, Ptpn13ip)

gaattcggcacgagct

J. Cell. Physiol. 185, 269-279. 2000; FEBS Lett. 459, 291-298. 1999.

30

AI607511

Mus musculus

EST similar to Acidic ribosomal phosophoprotein

ctcgtgccgaattcggcacgag

Marra et al. [Unpublished].

31

AF466768 Mus musculus

5'UTR for Monoclonal antibody BBK-1 light chain

ggcacgaggcctcgtgccgaattcggcacgagg

Lee et al. [Direct Submission].

32

AF071010

Mouse mammary tumor virus (MMTV)

Putative integrase, fusion protein, insertion of proviral MMTV into mouse SH3 domain-containing protein

ctcgtgctgaattcggcacgagga

LVLNSARG

Popken-Harris et al. MMTV in Mice. [Unpublished]; Virus Genes 23, 35-43. 2001.

33

U35364 Rattus norvegicus

Sly1 homologue

tctcgtgccgaattcggcacgagc

SRAEFGTS

Gene 169, 293-294. 1996.

34

NM_019326

Rattus norvegicus

Gene for neurogenic differentiation 2 (Neurod2)

gaattcggcacgagctc

J. Neurochem. 88, 1041-1051. 2004; Biochem. Biophys. Res. Commun. 219, 526-530. 1996.

35

D82868

Rattus norvegicus

mRNA for bHLH protein

gaattcggcacgagctc

Biochem. Biophys. Res. Commun. 219, 526-530. 1996.

36

D63834

Rattus norvegicus

5' UTR for Monocarboxylate transporter MCT1

gaattcggcacgagct

Biochem. Biophys. Res. Commun. 217, 370-377. 1995.

37

NM_053484 & AJ131902

Rattus norvegicus

3' UTR for Growth arrest specific 7 (Gas7)

cgaattcggcacgagc

Chao CC [Unpublished]; J. Neurosci. Res. 74, 248-54. 2003.

38

NM_031626 & U14533

Rattus norvegicus

5' UTR & 3' UTR for Nuclear receptor subfamily 1, group H, 2 (Nr1h2)

gaattcggcacgagc &

agctcgtgccgaattc

Proc. Natl. Acad. Sci. U.S.A. 91, 10809-10813. 1994, and 92, 2096-2100. 1995.

39

U07609

Rattus norvegicus

5' UTR & 3' UTR for Na+-dependent inorganic phosphate cotransporter

gaattcggcacgagc & agctcgtgccgaattc

Proc. Natl. Acad. Sci. U.S.A. 91, 5607-5611. 1994.

40

NM_173145

Rattus norvegicus

5' UTR & 3' UTR for large homolog-associated protein 4 (Dlgap4)

gaattcggcacgagc & ctcgtgccgaattc

J. Biol. Chem. 272, 11943-11951. 1997.

41

NM_134335

Rattus norvegicus

5' UTR & 3' UTR for Myosin IXA (Myo9a)

gaattcggcacgag & ctcgtgccgaattcg

Baehler M. Protein Myr 7. [Unpublished].

42

NM_053770

Rattus norvegicus

5' UTR & 3' UTR for Arg/Abl-interacting protein ArgBP2

gaattcggcacgag & cgtgccgaattc

J. Biol. Chem. 274, 30914-30918. 1999.

43

Oryctolagus cuniculus

MRNA for alpha-1-antiproteinase F

cggcacgagctcgtgcc

J. Biochem. 109, 158-162. 1991.

44

AY141975

Papio hamadryas

5'UTR for Epididymal protease inhibitor 2 (Eppin)

gcacgagctcgtgccg

Sivashanmugam et al. Baboon. [Unpublished].

45

AF147784 Canis familiaris

Retinal-specific clusterin-like preprotein (Clul1) [L:Kiaa1191]

actcgtgccgaattcggcacgagc

TRAEFGTS

Gene. 243, 151-160. 2000.

46

NM_001003025

Canis familiaris

Gene and mRNA for ID3 protein

gaattcggcacgagct

Exp. Cell Res. 279, 62-70. 2002.

47

AB099113 Bos taurus

5'UTR for mitochondrial RNA, similar to 12S rRNA

ctcgtgccgaattcggcacgag

Mol. Reprod. Dev. 65, 9-18. 2003.

48

U83919

Bos taurus

mRNA for Neurofilament L subunit

gaattcggcacgagctc

Hill et al. [Unpublished]; J Mol. Neurosci. 20, 223-32. 2003.

49

L81157

Equus caballus

Immunoglobulin mu (IgM), VDJC region

gaattcggcacgagctca

EFGTSS

Immunogenetics 45, 386-393. 1997.

50

L81159

Equus caballus

Immunoglobulin mu (IgM), VDJC region

aggaattcggcacgagag

RNSARE

Immunogenetics 45, 386-393. 1997.

51

AF506976

Equus caballus

3' UTR for Capping protein

ttcggcacgagctcgtgccg

Takafuji et al. [Unpublished]; Am J Vet Res. 63, 551-8. 2002.

52

L27860

Equus caballus

T-cell receptor DNA, V region

tcgaattcggcacgagca

SNSARA

Immunogenetics 40, 135-144. 1994.

53

NM_214016 & AF384216

Sus scrofa

Gene for CECR1 protein

gaattcggcacgagctc

Gene 280, 27-36. 2001.

54

Sus scrofa

5'UTR for vascular cell adhesion molecule (VCAM)

gaattcggcacgagct

Biochem. Biophys. Res. Commun. 201, 805-812. 1994; Transplantation 60, 1299-1306. 1995.

55

NM_214078 & AF163766

Sus scrofa

3'UTR for P-selectin (SELP)

gctcgtgccgaattc

J. Immunol. 164, 3309-3315. 2000.

56

AF049746

Monodelphis domestica

Gene for Ig lambda light chain

ggcacgagctcgtgccg

J. Immunol. 161, 6724-6732. 1998.

57

AF010497

Monodelphis domestica

5'UTR & 3'UTR for MHC class II beta chain precursor (Modo-DAB1)

aattcggcacgagct & agctcgtgccgaattc

Immunogenetics 49, 461-463. 1999.

58

AJ291982

Platichthys flesus

5'UTR for 40S Ribosomal protein S15a (Rps15a)

gaattcggcacgagc

Aquat. Toxicol. 65, 141-157. 2003.

59

NM_204873 & AJ012287

Gallus gallus

3'UTR for Alpha tectorin (LOC395686)

agctcgtgccgaattc

Hear. Res. 130 (1-2), 62-74. 1999.

60

NM_204412 & U01339

Gallus gallus

5'UTR & 3'UTR for Achaete-scute complex-like 1 (ASCL1)

gaattcggcacgagc & ctcgtgccgaattc

Mol. Cell. Neurosci. 25, 374-382. 2004; Development 120, 769-783. 1994.

61

AY775183 & AY727528

Pimephales promelas

3' UTR for Estrogen receptor alpha

ctcgtgccgaattcg

Filby & Tyler. Fathead Minnow. [Unpublished]; Environ. Sci. Technol.. 38, 6314-21. 2004.

62

AF179870 Rana pipiens

Guanylate cyclase type 2 (Gc2)

ctcgctcgtgccgaattcggcacgaga

LARAEFGTR

Mol. Cell. Biochem. 254, 9-19. 2003.

63

AB178055 Rana japonica

5'UTR for Gonadotropin alpha-subunit (GTH alpha)

aattcggcacgaggcctcgtgccgaattcggcacgagg

Nakano et al. Gonadotropin subunit in Frog Pituitary Gland. [Unpublished].

64

AB072909 Xenopus laevis

5'UTR for Claudin4L2

ctcgtgccgaattcggcacga

Gene Expr. Patterns 2, 23-26. 2002.

65

AJ243595 Xenopus laevis

5'UTR for homeodomain transcription factor XPitx2B

ccgaattcggcacgagctcg

Mech. Dev. 90, 41-51. 2000.

66

AF115498 Xenopus laevis

Smad1 antagonistic effector (Sane)[R:Man1]

ctcgtgccgaattcggcacgaggt

LVPNSARG

J. Biol. Chem. 278, 428-437. 2003.

67

AF069737 Xenopus laevis

Gene for notchless (Nle), a Notch activity modulator

gaattcggcacgagctc

EMBO J. 17, 7351-7360. 1998.

68

AF419156

Xenopus laevis

Map kinase-interacting kinase

RIRHE

Curr. Biol. 12, 105-114. 2002.

69

AF419153

Xenopus laevis

Mitotic phosphoprotein 67 [L: Map kinase-interacting kinase]

ttcgaattcggcacgagg

FEFGTR

Curr. Biol. 12, 105-114. 2002.

70

AF419149

Xenopus laevis

Mitotic phosphoprotein 22

ttcgaattcggcacgagt

FEFGTS

Curr. Biol. 12, 105-114. 2002.

71

AJ249625

Paracentrotus lividus

Gene for for Chaperonin (Hsp60)

gaattcggcacgagctc

Cell Stress Chaperones 5, 87-89. 2000.

72

AY027936 Salmo salar

Hyperosmotic protein 21 (P21) [R: ring-box 1, Rbx1]

ctcgtgccgaattcggcacgagcg

LVPNSARA

Am. J. Physiol. Regul. Integr. Comp. Physiol. 282, R1643-53. 2002.

73

AY190729

Pagrus major

Ribosomal protein L10a

ARGSCRIRHE

Aquaculture 240, 115-130. 2004.

74

NM_199765

Danio rerio

PHD finger protein 6 (phf6).

tctcgtgccgaattcggg

SRAEFG

Proc. Natl. Acad. Sci. U.S.A. 99, 16899-16903. 2002.

75

BC044163

Danio rerio

Similar to RIKEN cDNA 4931428F02

tctcgtgccgaattcggg

SRAEFG

Proc. Natl. Acad. Sci. U.S.A. 99, 16899-16903. 2002.

76

AJ431209

Carassius auratus

5'UTR [& CDS] for Proopiomelanocortin (Pomc)

gaattcggcacgagc [& cctcggcacgagctc

PRHEL, base changes]

Regul. Pept. 115, 101-113. 2003.

77

AF013800

Salvelinus alpinus

5'UTR for Metallothionein A (MT A)

gaattcggcacgagct

Mar. Environ. Res. 46 (1-5), 551-554. 1998.

78

AY713401

Crassostrea gigas

Calmodulin, calcium-dependent protein kinase

cctcgtgccgaattcggcacgagg

PRAEFGTR

Huvet et al. ESTs. [Unpubl.]; Gene 343, 211-20, 2004.

79

AY026258

Biomphalaria glabrata

Thioredoxin peroxidase BgTPx

aattcggcacgagca

NSARA

Cousin et al. [Unpubl.]; Mol Biochem Parasitol. 126, 181-91. 2003.

80

AY069220

Drosophila melanogaster

Gutfeeling (Guf, GH26763), Longest ORF [R: Ornithine decarboxylase antizyme]

gctcgtgccgaattcggcacgaga

ARAEFGTR

Stapleton et al. [Direct Submission ] Genome Biol. 3, RESEARCH0080. 2002; Genome Res. 12, 1294-300. 2002.

81

U48394

Drosophila melanogaster

Gene for ribosomal protein S5 homolog (M(1)15D)

gaattcggcacgagct

Genetics 144, 215-228. 1996.

82

AF242203

Drosophila melanogaster

5'UTR for Pins protein (Pins)

gaattcggcacgagc

Curr. Biol. 10, 353-362. 2000.

83

AF005852

Drosophila yakuba

Gene for Anon1G5

cgaattcggcacgagct

Proc. Natl. Acad. Sci. U.S.A. 94, 9746-9750. 1997.

84

AY295775

Depressaria pastinacella

Cytochrome P450 (CYP9A7)

atcgaattcggcacgagg

IEFGTR

Insect Mol. Biol. 13, 603-613. 2004.

85

Anopheles gambiae

ENSANGP00000014770 (ENSANGG00000012281)

YVPNSA [base changes]

The Anopheles Genome Sequencing Consortium

86

Plutella xylostella

5'UTR for Ribosomal proteins L21 & S28

ggcacgaggcctcgtgccgaattcggcacgagg

Eum et al. EST Analysis of moth. [Direct Submission]

87

AF014463

Phoneutria nigriventer

Gene & mRNA for Neurotoxic protein (Pn2-5A)

ctcgtgccgaattcgg

Toxicon. 36,1843-50. 1998.

88

AF026060

Chironomus tentans

Telomeric region

gaattcggcacgagctc

Kamnert et al. [Direct Submission]; Insect Mol. Biol. 11, 167-74. 2002; J. Mol. Evol. 46, 562-70. 1998.

89

Y11879

Arenicola marina

Trypsin-like protease

cgtgccgaattcggcacgagt

RAEFGTS

Eberhardt and Peterson. [Direct Submission].

90

Y08489

Schistosoma mansoni

Serine-rich protein

gaattcggcacgagcttt

EFGTSF

Schuessler P. Molecules in the male-female interaction of S.mansoni. [Unpublished].

91

AY223273

Schistosoma japonicum

hypothetical protein UBX domain

cctcgtgccgaattcggcacgagg

PRAEFGTR

Nat. Genet. 35, 139-147. 2003.

92

AB104619

Polyplastron multivesiculatum

Cellulase (celA)

gcacgagctcgtgccgaattcggcacgagg

ARARAEFGTR

Takenaka et al. Fibrolytic enzyme cDNA from rumen ciliates. [Unpublished].

93

AY029595

Schizophyllum commune

Putative beta-glucan synthesis-associated protein (bgs1)

gcacgagctcgtgccgaattcggcacgag

ARARAEFGTS

Guettler et al. Bgs1 gene. [Unpublished]; Fungal Genet Biol. 39, 191-8. 2003.

94

AJ005572

Plasmodium falciparum

Hypothetical protein [R: karyopherin beta (KP1)]

acgagctcgtgccgaattcggcacgag

TSSCRIRHE

Shams-Eldin et al. [Unpublished]

95

S79293 & D16136

Dirofilaria immitis

Filarial common antigen [R: Cloning Vector, i.e., pUC & Phage f1 deriv.]

gctcgtgccgaattc

ARAEF

Chin. Med. J. 108, 466-468. 1995.

96

AB002777

Entamoeba histolytica

5'UTR for ribosomal protein S29

ctcgtgccgaattcggcacgag

Biochem. Biophys. Res. Commun. 236, 611-615. 1997.

97

AB002794 and AB002739

Entamoeba histolytica

Small subunit rRNA

ctcgtgccgaattcggcacgag

Biochem. Biophys. Res. Commun. 236, 611-615. 1997.

98

AB002728

Entamoeba histolytica

Elongation factor 1 alpha (Ef1A)

cctcgtgccgaattcggcacgagg

PRAEFGTR

Biochem. Biophys. Res. Commun. 236, 611-15. 1997.

99

AB002741

Entamoeba histolytica

Amoebapore C homologue

SCRIRHE

Biochem. Biophys. Res. Commun. 236, 611-15. 1997.

100

AB002731

Entamoeba histolytica

Histone H1

ctcgtgccgaattcggctcgaggc

LVPNSARG

Biochem. Biophys. Res. Commun. 236, 611-15. 1997.

101

AJ496453

Laminaria digitata

Mannuronan C-5-epimerase (Epi)

gaattcggcacgagc

EFGTS

Plant Physiol. 133, 726-735. 2003.

102

AF273835

Caenorhabditis elegans

Nuclear receptor NHR-91

ctcgtgccgaattcggcacgag

SCRIRHE

Robinson-Rechavi et al. HNF4 in nematodes. [Unpublished]

103

X68492 , L03711

& L04287

Caenorhabditis elegans

Gene and mRNA for Rac1 homologue, a small ras-related protein

gaattcggcacgagcttgtgc

J. Biol. Chem. 268, 320-324. 1993.

104

AB047581

Hydra vulgaris

Gene, mRNA & 5' UTR for homologue CnDMC1

gagctcgtgccgaatt

Mochizuki & Fujisawa. [Direct Submission].

105

L22612

Hydra vulgaris

5' UTR & 3' UTR for tyrosine kinase receptor

gaattcggcacgagct & gctcgtgccgaattc

J. Biol. Chem. 275, 10323-10330. 2000.

106

AF306544 Hydra vulgaris

3' UTR for Serum response factor (SRF)

gctcgtgccgaattc

Dev. Biol. 236, 304-315 2001.

107

AJ250043

Anisakis simplex

Hypothetical protein

cggcacgagctcgtgccgaattcggcacgagga

RHELVPNSARG

Arrieta et al. Anisakis simplex for a 12 kD protein. [Unpublished]

108

AY057457 Stizostedion vitreum

Major histocompatibility class I receptor

cctcgtgccgaattcggcacgagg

PRAEFGTR

Immunogenetics. 53, 760-769. 2001.

109

Y15794

Theileria annulata